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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027708 Open in IMG/M |
| Scaffold ID | Ga0209188_1007833 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6360 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000684 | Metagenome / Metatranscriptome | 938 | Y |
| F037030 | Metagenome / Metatranscriptome | 168 | Y |
| F045504 | Metagenome | 152 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209188_100783314 | F000684 | AGGA | MTIQGYTYQIGDLFTTSTTGITGRINSFAPISNKVTRVGLTLANGSKRLA |
| Ga0209188_10078333 | F037030 | AGGAGG | MNNENKARIRTTWTMIGVTILTLIFGVNPVNAAQMQETVVYNRNILYINKYVNLVNIKNIINIDYINNKKISNRTVYLINDLSSGKKFLMPAYSKMLNLNSRVDQRVIISRLANALLSQETGGVGAYYRKSYSSSACGAFQYMSTSWNNFMGYKNACDAPEWVQDKRIVNELQFSYNRYHDWKKAIAAHLYPSRAGNPSTWSKPIPGNPTVFQYVTAVFKKANIRYA |
| Ga0209188_10078339 | F045504 | GGA | MNKISDLCNNIFYEIDYECDLAHIYTDKYYFAIFCSGLPNLIYGLEAHYRQTELLFGFTDDELKILQKQRPRRSAIDEINYQIERKSYNLEIIQSSDLISRLPFASQSRNRNGKQNIADSRWKNAIKNENFDVLRLIEWYEEEESYICTMFPNVKWTKGTFSISPCHIYPAKKDRDAPAWTPDKILRDLSIVNKCFDKISASPLAGKHAINAEDAQIAVDYLEDQDWEKLSISRRVLYCLLKRRILQNFYSEYKITDIDLDI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |