NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1009764

Scaffold Ga0209188_1009764


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1009764 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5529
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001937Metagenome / Metatranscriptome614Y
F038244Metagenome166Y
F075840Metagenome / Metatranscriptome118Y
F095129Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100976410F075840N/AMWAKWFVGNAMTAVVIIGKSPIDFSSHDWKQAANTIWLSIVPVIVAWANPKHDLTITKPK
Ga0209188_100976411F095129GGALNIQGLTLNPETKQLALHLAEKTFERYRNNPGHYRNTLSSHLVGHLGEFAAFIWLRDNGFEPEAAFSDPSKDKEADISTNVGRIEVKTWSERYWEQWGRCVSVSQYASIQRKADFIFWLSVDEVDSDTPKVAFRGWCEVDIFEGMSPIMTGDPGREVRNYQLHPSQLKPVEEMEKLHGSREDS
Ga0209188_10097647F038244AGGAGMAISSAQVTVTTAATLLVAADMQAEQVNFHSSSGTIYLGDANVTSSTGYRMDNGDKVVLQNHETAIYGITSTGSATMSVLVITK
Ga0209188_10097648F001937N/AVSSDVATIVYSYFFVAAAILAGVGIVAKHAIKTHTESIEEKLGRIEYALYNDGKTGLINKVEELLENQQAIKLDVEIMKVKSEAKPRTRAK
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