NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1011428

Scaffold Ga0209188_1011428


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1011428 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4995
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F044486Metagenome / Metatranscriptome154Y
F099274Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_101142810F099274AGGAGMARVDGEIVKVGDWVSFKCDIEQSGRITKIEGDRLYLEAGPNGFEGGYIGGQEKTVQLARDCWLEG
Ga0209188_101142813F000652GGAGMKKVIVRTELMQELLVPDDWEREHVLDFLGEFQSFRTAFQGVSNEDQTARIVDLGVVIETVEQLGEECFDE
Ga0209188_10114285F044486AGGAMLNINNTLKWLGCATVVAGALCTSLRIDPLNIYLLNVGALAYLLWAIRIRETNLIIVNAVLLAIYILGLFQ
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Institute for Fundamental Biomedical Research
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