Scaffold Ga0209188_1011539

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209188_1011539

Scaffold Ga0209188_1011539

Overview

Basic Information
Taxon OID	3300027708 Open in IMG/M
Scaffold ID	Ga0209188_1011539 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4967
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (91.30%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F029973	Metagenome	186	N
F042141	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_101153911	F001629	AGGGGG	VDLNQGKVADGLVDELLEAIHKYDETLYMSTVIGVLELVKQQLINDSLESEDD
Ga0209188_101153914	F042141	GGA	MKLTIEIDNDTVDEIFLQRLIEDLGLLQTETLTVFSHEPEIEKQHIGALKGAYKQILSYYGVTV
Ga0209188_10115396	F029973	GAG	MSDRFDLEQAILRADMEADLNLLFDRVCNGPELSQDDMANALLGLITLNALRHEKLWNIFEDMCHQRKFKDKYEKVD

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