Scaffold Ga0209188_1021813

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209188_1021813

Scaffold Ga0209188_1021813

Overview

Basic Information
Taxon OID	3300027708 Open in IMG/M
Scaffold ID	Ga0209188_1021813 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3255
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022833	Metagenome	212	Y
F037627	Metagenome	167	N
F061646	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_102181310	F022833	AGGAG	MAYNSTPKLPRKAPKLQDSLVTKIQENRELKDTIKDLHTQAEKDKAFLREVQDESNNLELALKKCILSKAELNNKVEQLQDDLEKYIELYASTKIVAQALGEAVYYLT
Ga0209188_10218135	F061646	AGG	MKSRYIFDKINQDITASIAGEIERTCPRAHAPTNDDLICALIFIVSVTLLIFI
Ga0209188_10218139	F037627	AGG	MKPLICADCKWHLASKQSSAVANYDRCKASEVINLVTGEAKYSYCESMRMSNSDCGMDGKLFELNQAEEETSDGV

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.