NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1023715

Scaffold Ga0209188_1023715


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1023715 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3071
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001937Metagenome / Metatranscriptome614Y
F075840Metagenome / Metatranscriptome118Y
F095129Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10237154F095129GGALNIQGLTLNPESKQAAWLLAEKTFERYRHNPGHYRNTENSHLVGHLGEFAAFIWLRDNGFEPVASFSDPSKDTEADIFTNVGRIEVKTWSERYWQQWGRCVSVSQYASIKRKADYIFWLSVDEVDSDTPKVAFRGWCEVGIFEGMSPIMTGDPGREVRNYQLHPSQLKPVEEMEKLHEARGNTSNSH
Ga0209188_10237155F075840AGGAMKFNNKVLEMWAKWFVGNAMTAVVIIGKSPIDFTSHDWKQAANTIWLSIVPVIVAWANPKHDLTMTKTKG
Ga0209188_10237157F001937N/ASDIATIVYSYFFVGVALLGGMGLIAKHTIKKHTESIEDKLARIEYALFNDGQTGLINKVDQLIENQLAIKIDVEVMKARAESKPRTRAK
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