NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1033429

Scaffold Ga0209188_1033429


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1033429 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2433
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031399Metagenome / Metatranscriptome182Y
F077013Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10334292F077013AGGMSEPSVIYNVKDLIRELEALEPGLKKQLVRDAKDVAKPIASIIKSSIPTTAPLSGMNESGRLGWGVGKPANSVTIKFRTGRSRVSAVTPLVSIWVNSPMTAIADVAGKGGNRKAKKVTSEYAYKGGKRRHAVTSQGRVMIQRLRQKNLNNFVYPNVEDSLDDAQAQVKLVIDRYARKVNRKLN
Ga0209188_10334293F031399AGGMNQITLTINFTDGTTYEVKTSAGDIVKWEAHFDLGIDKLEKVTHLLYLAWLAVVRLKKTSDTFDGWIDTVANVEVADPKD
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