NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1047673

Scaffold Ga0209188_1047673


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1047673 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1923
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038245Metagenome / Metatranscriptome166Y
F045760Metagenome / Metatranscriptome152N
F078719Metagenome / Metatranscriptome116Y
F099303Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10476734F038245AGGAMKIYFGNANEDMFADGLFHINENQFYYGVEHGTNAGGLDEVCLFDGCGRTLPIHMEAIPELIAALEEIRTIGEAVKRAQELTERAESNAEGQVTNIWNDSYEVEFDSE
Ga0209188_10476735F045760GGAGMASVSKSKQAYSALYKSTTRWATNRKLKLTRVLKQQPNNEQIKDALTNIKYRRHTPTTKTVWSHNNIRIAKLFKEFTGHASQDLFSSNPKVQSAALAYRPNTEKLKVIEGKVSFSFGARAHDSKGNLIWK
Ga0209188_10476736F078719AGGMEIIELYILFALTTGISSCYLFLVPAVNLAKDLNITNSFTKSTWLSYLIYIIITSITAPFSVLPIFIPSFAERFKIGLEKSVMESQI
Ga0209188_10476737F099303AGGMNFIEFTYTKADGTESKRAVLPLVGPTKFVEGIDVSQMPEDEFVVFCRDFSAMKSAQHEQTMAMLEQFDLKHNYRRFIPEQMSDITTDYV

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