NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10000122

Scaffold Ga0209599_10000122


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10000122 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55547
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (74.32%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001957Metagenome / Metatranscriptome611Y
F018716Metagenome / Metatranscriptome233Y
F043403Metagenome / Metatranscriptome156Y
F093229Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000012222F043403GGAMANTLHTKQNTLTTLNNISNSVLTAGSNGTSYTTAWTNPIENNILTVKNNPAGLDVKGTLVVNGRDLEERLDTIEKVLQIPERDVILERKHPKLKKLYDEYIEALGKYRTWNNIKGE
Ga0209599_1000012227F018716N/AMELAENTVTVAWDNQNGFWWNETCALVLEVFGLPGSRYSSHPMQDAMFFIFNSKKDADLCRILLSERL
Ga0209599_1000012231F001957AGGAGMNSADMANNLIFRAKHLQEFVVTTSVPEDFKFNGIVPFDMEIKEEQISAKVLAIDFNEAVDTFDKWLETCK
Ga0209599_1000012233F093229GAGMIAQPVAEGVLIRKDYGDAKIYQIVCECGDCDHSHDVWVEAEDHGVTVTIYSKQKTKWWQSNRWKIIWTLLTRGYVERESTIIMSEQQALNYANVLQSAVKDVKDFRKERNVKNKNS
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