Scaffold Ga0209599

Basic Information
Taxon OID	3300027710 Open in IMG/M
Scaffold ID	Ga0209599_10000210 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027710 Open in IMG/M

Scaffold ID

Ga0209599_10000210 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41480
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (71.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

41480

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (71.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F006698	Metagenome / Metatranscriptome	366	Y
F007580	Metagenome / Metatranscriptome	348	Y
F018539	Metagenome	234	Y
F043926	Metagenome	155	Y
F064710	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000021012	F007580	AGGA	MKFIGLVSKLINFIYMFFKEHLGHISAHTLGWITIVLLHFAAVPTLLAMILAQSDKLPPYDLMIFVWAALTTLFFKSLIEKNFLYVSTICVGFIGQVVMLGMIVFK
Ga0209599_1000021044	F064710	AGGA	MSDNTKDKLTSLMLQMQDIIMEDYEDNVDIQDAFNALASAFDYYIDEE
Ga0209599_1000021045	F018539	AGGAG	MLSTAFNTLAKAKLVYNKQKELYKLVVAFNVHTKVKENGDIVHIFPTQAKCAYVSGDINYEELQAEVSRLTETAKKHCRTDNIEFV
Ga0209599_1000021049	F043926	GGA	MFYKDKLYTGHYWTDELSLARARRKVAELQRYHPAMRFTLTDWEKGSIINLHTNTKELA
Ga0209599_1000021051	F006698	AGGA	MTRYYDELAVYERNGFDVIVDKSYEDMDPKDCFDDSCFDLKEMYSDIEHGNLDWFMLRVRVMVENIELSSQFLGGCLYKDAREVLTDGTAEDLIAEALVEAKKDVYRLYKKFQDISWELDAEGCNV
Ga0209599_1000021054	F000652	GGAG	MKVLVTTVLRQEIEVPDGWEKAHVLDFLAEYQSFRTAFQGVSNEDQTARIIDIGVVDEEIAELSEGPY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209599_10000210

Overview

Ecosystem & Geography

Associated Families

Sequences