NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209599_10000316

Scaffold Ga0209599_10000316


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10000316 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34315
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (75.81%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004517Metagenome / Metatranscriptome434Y
F023062Metagenome211Y
F042791Metagenome157Y
F050225Metagenome145N
F085148Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000031616F050225AGGMLQSEKDSERFYEAQRKFEQRQRMIDKGWGDVKAYKALEAEKKRKDRMESIRLFILGGLFAVVFCVLFFGANYLINGYTI
Ga0209599_1000031622F023062GGAMDNGIDLIRYGALWQKVENYEAKFQEMSDKIDKLEASIESLVAMANRSRGALWLGLGIVSSASTVMGFVAHWFSSK
Ga0209599_1000031638F042791AGTAGMFASAFQANAFQNNAFQVYVPPPPTNEKVGGDDASWTAEELKRIRRLQQKIAERQRLLEKATKDANASRKQAFKNLIDPVAKVKQPKVQSKQEVKADIPLAETQDLERSISYLKRQRDNILAAVAYRNQQYLIQEQLRVMEAKRLEELDDEAALLLLL
Ga0209599_1000031648F004517AGGAMFTKEKIKPENSLLQKHKESTLEKNQRERLERRAAIANKLKDLDKEVK
Ga0209599_1000031660F085148AGCAGGLAQSYIAIAQRYRNWDLVKELIERNKDTEADVKKRIKEILGK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.