Scaffold Ga0209599_10000365

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209599_10000365

Scaffold Ga0209599_10000365

Overview

Basic Information
Taxon OID	3300027710 Open in IMG/M
Scaffold ID	Ga0209599_10000365 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	30952
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (84.75%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)		Depth (m)	2500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008496	Metagenome / Metatranscriptome	332	Y
F027180	Metagenome / Metatranscriptome	195	Y
F061858	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000036529	F061858	N/A	MRFSHNKIDGTFVIGISFSNYYNSKLGYKNTSLIFDLGKHSVAFIFRGEH
Ga0209599_1000036539	F027180	GGAG	MAIKLFNRKPVERNIIYPDLWTYLDKLMSEMSSTETYIEYLREREKV
Ga0209599_1000036544	F008496	AGGAG	VEFTTSEPTFGRPNAEAILESVAPVYNPKATIVVRKGYYYGTPSDSKFEVENADDISRTYWRVDALQSTNSSNSRAQDKLKDYLVENFDEIGEEHATEIANIFGIDLSKTVDVEFNVTIKATISVPMNTEVSDLSVYDFDVEISSSEYEIEEFDADIDSIDEQY

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