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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027710 Open in IMG/M |
| Scaffold ID | Ga0209599_10000387 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29316 |
| Total Scaffold Genes | 70 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (70.00%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000376 | Metagenome / Metatranscriptome | 1216 | Y |
| F000441 | Metagenome / Metatranscriptome | 1136 | Y |
| F007644 | Metagenome / Metatranscriptome | 347 | Y |
| F007921 | Metagenome / Metatranscriptome | 342 | Y |
| F008814 | Metagenome / Metatranscriptome | 327 | Y |
| F011394 | Metagenome / Metatranscriptome | 291 | Y |
| F014140 | Metagenome / Metatranscriptome | 265 | Y |
| F031497 | Metagenome / Metatranscriptome | 182 | Y |
| F038241 | Metagenome / Metatranscriptome | 166 | Y |
| F066776 | Metagenome / Metatranscriptome | 126 | Y |
| F105192 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209599_1000038716 | F014140 | N/A | MNKYRIKLDVEVEVEAFNSEDAGEYIHDIFNIDDEIKKVNIVKIQQK |
| Ga0209599_1000038719 | F066776 | GGA | MLNLTEQGVEIFIKKFQSSVQKSFWNNYDLVIWKKDHGGYTDTKGMYYNNTWGKAEKISVDKKGIWKLPKKYVRYFK |
| Ga0209599_100003872 | F000376 | AGGA | MSEYQEMARQCKCCTKHVPLPTVMKTYNGLIVCPTTLQNIIEYNRLWETFGSRPMGSIRKHFSEYVQQIVENQYSNKEGINGNT |
| Ga0209599_1000038721 | F011394 | GGA | MFIDKNKNHFKYGINEWTGEPNKPTFYTKEMALKIRELKKPTSTLEMDIVKYPDFLAIRLYENNFAQYDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGKNHG |
| Ga0209599_1000038723 | F105192 | N/A | MNIPLTEILITLFAAAISGLLTAQIGARRSKKEKAERQVEKAHDQLLLELKDLEIKLYKLEKDLNEWKDKYFEALQELIRVKAELEGTLLKLSHLEIHSDEH |
| Ga0209599_1000038728 | F008814 | N/A | MDNKLTVLEEIIKEIGEELYQKWYNALAIEDRTEEASKAMSANAGETAVWVIQTFMNKFNNAADELKGD |
| Ga0209599_1000038757 | F007921 | AGGA | MIDWLVNRIFRWDSLRKAVFDEVRMYQSIDRSMWEYEKEGPTNLTWSEGDRWYGWTYNSNAKRYYFDDIGNESLIGLWEDQWLREADAH |
| Ga0209599_1000038764 | F031497 | AGGCGG | MSKTQEIKVAESLVNLMDDHWFNPTIFGRYLAEQPIYTIDRIMEMVVSVISEQAKMYDVYSNQGTYTEGLALAKELNECIKAYQQDNNLVNLKLPSRSYKVKREEPVRERIFGWREEEDPFSQ |
| Ga0209599_1000038766 | F000441 | AGGA | MKMSDNYLNDQLNTAQKLLWGGSETENIEAHNIIAKLIKDRIEQADLS |
| Ga0209599_1000038769 | F007644 | AGGAG | MTKSSQFMEYMKLHLISLEQDLEMNPESINVIDIPGQIEATRHLLSVATDIMNSTNERV |
| Ga0209599_1000038770 | F038241 | N/A | YVLGIRGGIMLGYTKEDIDQMSNAIHDAKLFYIMKSDVEQVDKDPLVEGLLKANDFLQGLWAEGYFD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |