NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10001290

Scaffold Ga0209599_10001290


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10001290 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12325
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010749Metagenome / Metatranscriptome299Y
F015332Metagenome / Metatranscriptome255Y
F047475Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000129011F047475GAGGMEGCQYIGPEQVSGSFTMCGCKALWPGKAYCEEHVWKVYQKGSSKGNKRKLKEIENELADIKRLQEIAEIENA
Ga0209599_100012903F010749N/AMKRFTFWRNAIVSEVYVVECETEEQARTMLQNGEVEVFTEEWMDWATRDFELEHEEIIDPLYLMIKQHTQKETV
Ga0209599_100012908F015332GGAGMFTADQVWGLAVAADRINGGYFKEDAYVMENECRKMTKQANKLMVKAWLRTGAFSEATAEDIEKGREIRNYFNGFLLKQISGKINDFEQQALRIAQMDEFTGKNMLEFAIVSCLPSVMLRDQSKNELAREVRQSTQLQGNVGDKIQGEIEVVKCYYSQEYNKFRITAKLVDSFVDFWYNTNMDAGDRVSIKAKIKSVRGDNTTQLNFVKRG
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