NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10002163

Scaffold Ga0209599_10002163


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10002163 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8390
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014118Metagenome / Metatranscriptome265Y
F034177Metagenome / Metatranscriptome175Y
F040097Metagenome / Metatranscriptome162Y
F042327Metagenome158Y
F054862Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000216310F014118GAGMASVKKNSAFYQQDAVMGKLSAEARKPQALNAIVRAAMEQGEANRIYLAKREAEEKLNPPRIYFRY
Ga0209599_1000216314F042327GAGMAKEREFKIDLLLAADIAQFLETLLEAELNDEFDAEEPCTDTYLDQFMPNGFISNSDLIEALLASGIVKKV
Ga0209599_1000216318F054862GAGMTREQRDAAKQRVVALSSRLDAIQTLTENMSDQGGIEIANIINEIKAEIDALTKRIATKWEFLFNFKGGGWNSEVAFTREDAIEQALFNYGHPDTQEHLRVDTSTFRVSTPEDYKNQLSSFY
Ga0209599_100021634F040097GAGMKKEARVEFGITITRPWSKEMYAHNEELAEVVKETVHQMWVDALKEAIEDYRDEDELGNLYSEMDWGQASDEMVRIQKAITYYSYCNQSIEEVADEVEETLEDMPLFQLKELVEELEIKLDKGFIGFN
Ga0209599_100021636F034177AGGMIQEQIKAIEARLEFLKTDTTKWVSAFAQPAGCTPYNHGNYFRKLERNKLKTKLKRLQKKLQIN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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