Basic Information | |
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Taxon OID | 3300027710 Open in IMG/M |
Scaffold ID | Ga0209599_10003595 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5887 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001176 | Metagenome / Metatranscriptome | 756 | Y |
F001280 | Metagenome / Metatranscriptome | 732 | Y |
F010248 | Metagenome / Metatranscriptome | 306 | Y |
F039131 | Metagenome / Metatranscriptome | 164 | Y |
F105175 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209599_100035951 | F001176 | GAG | VSDNGTGMTTPPNNEPSGAVTSQEAARKNPSQGKFRSGFSGPRPATKIDTNKHGIRRETVLGQKKTKPKKV |
Ga0209599_1000359512 | F010248 | GAG | MRKSDRIRLLEMEMLRMQFQIEYLNTAVTLLLEENKVKGPDMDAGKWYDAKLNKNK |
Ga0209599_100035952 | F001280 | GGCGG | MCVECGCESFGSETGINVIPGGMLNVSTDGEAGLTLSMTATPEQRERFISGE |
Ga0209599_100035953 | F105175 | AGGAG | MADGKDLNGFTSPKVNDAPVWATESYTEAPAAAFPATDKSSQDGAGLGNGGK |
Ga0209599_100035955 | F039131 | N/A | MIEYTMTQDEIYGLEGYFERKYIKQVVDQINNFEFPDDWTPKQVIDYITYKIDRK |
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