NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10003595

Scaffold Ga0209599_10003595


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10003595 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5887
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001176Metagenome / Metatranscriptome756Y
F001280Metagenome / Metatranscriptome732Y
F010248Metagenome / Metatranscriptome306Y
F039131Metagenome / Metatranscriptome164Y
F105175Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_100035951F001176GAGVSDNGTGMTTPPNNEPSGAVTSQEAARKNPSQGKFRSGFSGPRPATKIDTNKHGIRRETVLGQKKTKPKKV
Ga0209599_1000359512F010248GAGMRKSDRIRLLEMEMLRMQFQIEYLNTAVTLLLEENKVKGPDMDAGKWYDAKLNKNK
Ga0209599_100035952F001280GGCGGMCVECGCESFGSETGINVIPGGMLNVSTDGEAGLTLSMTATPEQRERFISGE
Ga0209599_100035953F105175AGGAGMADGKDLNGFTSPKVNDAPVWATESYTEAPAAAFPATDKSSQDGAGLGNGGK
Ga0209599_100035955F039131N/AMIEYTMTQDEIYGLEGYFERKYIKQVVDQINNFEFPDDWTPKQVIDYITYKIDRK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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