NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10003687

Scaffold Ga0209599_10003687


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10003687 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5804
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F004051Metagenome / Metatranscriptome455Y
F019325Metagenome / Metatranscriptome230Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000368710F000447GAGGMGYIEIFRMNDEGAGWVDLSEATPDEMFNIELGLLNEGALFTSPESD
Ga0209599_1000368716F019325AGGTGGMTTLTESLFSTIVHDYHNGGVKSSYGLDAYTRKEILTYLIRSKGCECINCLDKENN
Ga0209599_100036873F004051GAGGMTINDKLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPSKETRWTSVSAQTLLGV

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