NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10005440

Scaffold Ga0209599_10005440


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10005440 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4428
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F003690Metagenome / Metatranscriptome473Y
F006744Metagenome / Metatranscriptome365Y
F009143Metagenome / Metatranscriptome322Y
F017134Metagenome / Metatranscriptome242Y
F017995Metagenome / Metatranscriptome237Y
F085708Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000544011F000447AGGMGYIEIFRMNEEGAGWVDLAEATPDELFNIELGLLEEGAFE
Ga0209599_1000544012F006744AGGAGMNLDEFKKHVIAQREASKAQALSVLSATITTQTNERENLNG
Ga0209599_1000544013F017995GGAMAKVKEYIEIISAECDECGGAGFLFFGNENNYDVEPCACVDEISDELTVDWVNE
Ga0209599_1000544017F017134GAGGMELFTVACLNYEICGDKTTFDNESEYEVYGDDYICAECYASEEMEFFETIGWADSDALASAGHGMDEDY
Ga0209599_100054403F009143GAGGMMTKWDTIQADVSDAYVYLDEEEAYNKALAEGAIDLDADDYDDDELHKSLTLDWND
Ga0209599_100054404F003690GGAMIPNGFELSITNEYGFELDSFLGAIYLPWHTILITTALLIAYKIYKRKKNK
Ga0209599_100054405F085708AGAAGMTTNRLITTAVQIGIGIPTLLMMRLMWREIVADFREWDKSH
Ga0209599_100054408F001562AGGAGMEKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMENE
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