 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027710 Open in IMG/M |
| Scaffold ID | Ga0209599_10016675 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2121 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018175 | Metagenome | 236 | Y |
| F020355 | Metagenome / Metatranscriptome | 224 | N |
| F021538 | Metagenome | 218 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209599_100166751 | F020355 | N/A | CDVLLLPAGETVYSGKAADKIAMNTKSGKLFRWAIGAGHHEINVDTGYNTDGSRKSFRVPVKFADRGSIYSYPAPYRSVNHLTEYKVGTFVANSVVQNGNDVNVKLSSKFFDSNKFPAFNLESNYSPKSGWIRFAEFGGAAEYEWTPGTFKMIDDIDFNPNNWWIKETSKASLNKLMDAYSSNRSGAIIYRSTMNAISGKYEGEIFFRPSVERRDYPLNRTWQGLDRRVQFDLYVSKNRVVVVEDGYLVADSPLPVDFPFEEINVNYTHLIYHTWNEIGEQRTWNPDNAYWINFRPFADERHWDNMGFEVLTGFPNVKLF |
| Ga0209599_100166752 | F021538 | N/A | MESTIINCDCLCHSLHVRPDVESKTVDISLWNYGFNDGKLHWKKRLQILFDGFAYSDLVVLDKDELNKLISVLEDARGKIA |
| Ga0209599_100166753 | F018175 | GGAGG | VEKSPKNQKEYYHNKVREFEKRTGINMNVKNVSKFYDLNIEDVEYNTLAAKDMLFKHGCYIYHDLLVEEDPRSNGTNWLKYGFAYLNGKTYKYYYEIKQWGQEIKIDLEHYSSKTWKAAKVDNINLPSSVENKHVGSNFNDFSKEHNIELKRDMNWAIKMLAHGKIVYREEFPEVILFPIGLKNNPKTKLNVDDLFAEDWTIFRGKSLKEVLDDLDAGKSIRRKSWYPEYLMGKYSKDFELNLQDLKARDWEVIDVVDEVNQIQKQHLKDRNER |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |