NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10105782

Scaffold Ga0209599_10105782


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10105782 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)741
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091944Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_101057821F091944N/ASQEWETTLYSATNWDDTDSTDGEVVAAGTPTYYTEIKPFFIEAEELRSGLGFLGIDRIARLKRQLEGVTQHALELELWDGAIRKGEGHANKALSDASATILSGGTALSPRRALALLEHSIGQASDGGEQGIIHITRDVAALLASNSNMLFHEAGKEHLQTLGGTPVIVGSGYTGTGPDGASGATASATNKWIYATGTVRTYVGNVDVVNDSLAQAYDVSGNTNDMRLKAIRPAAVYFDTSIHLAVRV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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