Basic Information | |
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Taxon OID | 3300027712 Open in IMG/M |
Scaffold ID | Ga0209499_1002515 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11690 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (76.19%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F048283 | Metagenome / Metatranscriptome | 148 | N |
F063654 | Metagenome / Metatranscriptome | 129 | N |
F063657 | Metagenome / Metatranscriptome | 129 | N |
F066734 | Metagenome | 126 | Y |
F085612 | Metagenome / Metatranscriptome | 111 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209499_100251512 | F066734 | GGAG | VIQSALWFAFRGVLACGSALRRHWRRVIAATTMGIAIVRALIWIAKALASAGTVDAFLNLIGLGEYVAPFEQAVDHVIGTVVAIILTVTPTG |
Ga0209499_100251513 | F063654 | GGA | MEARTTKVRATLAPRMDPTRYTHSYVVNAVPQYRGFTVNEGDRSVTHLGLITWHQEDRERRNDAGGQIVRLIECDGTYTIRIVGPTTVRDWSAGKLSKARAHNGEWRDVWTGAASDGVTLMEAVARLRALRDAMQEDADAYRRGL |
Ga0209499_100251514 | F085612 | AGG | VNVTDPEYDGEIVTLGIRIFENVADDLPRWQPWIAGETARCVASLYRVGANHVRPTSVTQGSTRGVWQIILRDGRYAVVPWGGGRDAEVDLGTDRAVALAHLEERLAALTATEPRGQMELGL |
Ga0209499_100251518 | F048283 | AGGA | MKGEQVEIEVTYTPTLIGVGPEVGDDVNASCDAFAVQVHMELSARYPDADITVTRDHGHLADLSVVTHGVVDVPNVLTVRSAVWSDVWDMISPYGRYRRPVRGGILQASVPVVVVRPERRPDVFTMIVDDASGDSVIECDEDEARAVMRSGFGVMA |
Ga0209499_100251519 | F063657 | N/A | MNGDLMDDVVTEVSVTGAVTTDGRLRFSSPLDVEAWAHDHLLARLAWEYLIDGDDNGVQRDTDSALERVRTRLIPEAIRRTMLGRMSDGLYLTWAVYGLDDGRQVEFLERAWHELRRLIARGDR |
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