NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209499_1002515

Scaffold Ga0209499_1002515


Overview

Basic Information
Taxon OID3300027712 Open in IMG/M
Scaffold IDGa0209499_1002515 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11690
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048283Metagenome / Metatranscriptome148N
F063654Metagenome / Metatranscriptome129N
F063657Metagenome / Metatranscriptome129N
F066734Metagenome126Y
F085612Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209499_100251512F066734GGAGVIQSALWFAFRGVLACGSALRRHWRRVIAATTMGIAIVRALIWIAKALASAGTVDAFLNLIGLGEYVAPFEQAVDHVIGTVVAIILTVTPTG
Ga0209499_100251513F063654GGAMEARTTKVRATLAPRMDPTRYTHSYVVNAVPQYRGFTVNEGDRSVTHLGLITWHQEDRERRNDAGGQIVRLIECDGTYTIRIVGPTTVRDWSAGKLSKARAHNGEWRDVWTGAASDGVTLMEAVARLRALRDAMQEDADAYRRGL
Ga0209499_100251514F085612AGGVNVTDPEYDGEIVTLGIRIFENVADDLPRWQPWIAGETARCVASLYRVGANHVRPTSVTQGSTRGVWQIILRDGRYAVVPWGGGRDAEVDLGTDRAVALAHLEERLAALTATEPRGQMELGL
Ga0209499_100251518F048283AGGAMKGEQVEIEVTYTPTLIGVGPEVGDDVNASCDAFAVQVHMELSARYPDADITVTRDHGHLADLSVVTHGVVDVPNVLTVRSAVWSDVWDMISPYGRYRRPVRGGILQASVPVVVVRPERRPDVFTMIVDDASGDSVIECDEDEARAVMRSGFGVMA
Ga0209499_100251519F063657N/AMNGDLMDDVVTEVSVTGAVTTDGRLRFSSPLDVEAWAHDHLLARLAWEYLIDGDDNGVQRDTDSALERVRTRLIPEAIRRTMLGRMSDGLYLTWAVYGLDDGRQVEFLERAWHELRRLIARGDR
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