NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209499_1012922

Scaffold Ga0209499_1012922


Overview

Basic Information
Taxon OID3300027712 Open in IMG/M
Scaffold IDGa0209499_1012922 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4140
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030662Metagenome184Y
F048735Metagenome147N
F052343Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209499_10129223F048735N/AMDYKGLCLDAPQDTDYGIEAFQSLPQFIRELTAYRITRGEFGRRERIKLGIKLENTTLKNPAQHMVNCFNLIYGDEVLLQSQGIANNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQAKYGSVAAIGNLVEYRRMIVFESIDTRDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDVLEWDAVTRYTKQWKTRTGVALHLSGEDSPNFQKPDAEIPPFDRFLTIQGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFITNCDIAWEPRWSARTKVVCGFDPAFTAGGDRCAATFCRFGANDTGRNLGFYLGTREYTSSVGEVFEESIAIQVVRDCLEFGVHPRDFGLDISGDGGKMMRAIIIEWSKNHPDAMYVFPISSMGPPTDRKISNLDTRTCKEAYDRLVTEYWFAVHTAFSTRSLVGISLNDHAAMVSELCSRLYTHKGRKVAVEKKSDMKQRIKKSPDLADSMTYAVQMLRRAGLEFNFEEEVESLDIQEIQDWENRLIKNRGDKESPDGDDDMSYAGTSVDEDGF
Ga0209499_10129224F030662N/ALEQPMRLKDRNGPIPSGLWYEYSDDKGNVYRVNGMETVFGRSFSNKVSSDMKNNNVAVPDNLDYLIEQQICERIPGQFCWKEAGDKVANVIHRFANLGDKVAQSLGVQSNLEQRAKGCMSCQKRRQALNQVLG
Ga0209499_10129226F052343N/AMAKTKKIVNREGVSSWGFNTINSNGVAPTSRVQTANDAFTICWNLRLDNAGRERKWGRIYKCYKGFPPTDYSQVASRQLSGMSNVPFRQMKFIVDNQKSSFVDMVMERNTAANITTKLG

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