NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209815_1110667

Scaffold Ga0209815_1110667


Overview

Basic Information
Taxon OID3300027714 Open in IMG/M
Scaffold IDGa0209815_1110667 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)906
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034720Metagenome / Metatranscriptome174Y
F055212Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209815_11106671F055212N/AMDNKSSTSSRSPGDAEGEPVAKKTRLVYKTIIYDESIANQWLDEPPLEVWDHHII
Ga0209815_11106672F034720N/AMDTKSNKRPSEDPLANKKRLVSKTIVYDESKPNQWLDDPPLEIWDHVIIPMLGLKDLALARPVCTFFEAYWQEKFSNNVLPLRVGLDVATINDVMGVIETLSSRREYTKLNPFVVLLGKGNHEIISSWTTLNPDYDEDEDEDNELVEIETTLGITCNNITFLGTGKDTTTILGGFGIHDLENITFKNMTVTNTSEGGDGIYMENAKVELMDVALKGCGTCALN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.