NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209795_10029567

Scaffold Ga0209795_10029567


Overview

Basic Information
Taxon OID3300027718 Open in IMG/M
Scaffold IDGa0209795_10029567 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1812
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.0936Long. (o)-100.2988Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068443Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209795_100295672F068443GGAGGLRATRRRQRKADPLASLEAVRSVVEKLRSALPDLIPQKNKDLVRLLRAARHAQRYPATDTRRGRPGHWKREDLLRVATLLGDILDRETSSHISFASFVDHYLRLPDFPSDVIGVLESGDINLFEAEQLARIAAGRSGVSPSQAKRIRSELLSSHVQTKGSGERLRQRVNELLRASSAAAGEPGGGSDTELEDLEDFDPYDSTHLFWEQLKQLGFAFREVRREDVSDEEIEELLKASEPVLALLSRIRRRKGQGGVVKVRL
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