NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209795_10206184

Scaffold Ga0209795_10206184


Overview

Basic Information
Taxon OID3300027718 Open in IMG/M
Scaffold IDGa0209795_10206184 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)551
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.0936Long. (o)-100.2988Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020598Metagenome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0209795_102061841F020598GAGMEDLLAIEAETKFLLAAGDRSYEQTLMQELLKIFKEAELLFGPRDASYQLSIPRITECASSRTYMFRPLRMTRIYLSRESRIKPWLASLELAHEAVHVLSPVGFGGGPTILEEGLAEWFAQRYV
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