NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209492_1000062

Scaffold Ga0209492_1000062


Overview

Basic Information
Taxon OID3300027721 Open in IMG/M
Scaffold IDGa0209492_1000062 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34339
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (18.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050156Metagenome145Y
F050992Metagenome144N
F057997Metagenome135N
F068604Metagenome124N
F075863Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209492_100006210F050992AGGMNEEIKQSLLNWESMGKNYSPNFNYTDLNEIAINLGNKPFNLGCSECRRQLLEFLLATIKDGTSKQS
Ga0209492_100006230F075863N/AMKTQEQAILDALLGGQVITGSNAYQITKKECACGTLNLHKVLAKIRKKGYTINEEWCINSKSNTRFKEFTITNRKQKKNGN
Ga0209492_100006241F050156AGGAMEGRIVTEQQANELQGVFIDADTFFNFVQDIDGNYFMFTSEQDEAEIANTQYAYLLDIPLSPYTPPPTPIP
Ga0209492_100006243F068604N/AMANALRLTANGGCEYIDNNTPRTGKKYYCFIVQADTVVGTLTGGFSGDTTVNYLTSIGLGSKTLKQGAIIYAPGDAVFTNLTLTSGTIIAYAE
Ga0209492_100006253F057997N/AMENKKQTFKEVFSDMKELFKDIFQDEVKDLKFADYKAKDGSIVRTDTEEIAIGSKLQVITPEGVMDLPVEVTEMVIMVNEMPMKVYVENGVVKGIEPEEVMEEPVMEEMASDNNEQFEAKFAELNERLSKLESALGLSNQALEAANASILAQTDLNRKLFSLIEKVADAPSVEPKSTSKENFKKSNTTSLEEFRKKVYNY
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