NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209492_1000661

Scaffold Ga0209492_1000661


Overview

Basic Information
Taxon OID3300027721 Open in IMG/M
Scaffold IDGa0209492_1000661 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10669
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (67.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054870Metagenome / Metatranscriptome139N
F062760Metagenome130N
F063689Metagenome129Y
F066774Metagenome / Metatranscriptome126Y
F104778Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209492_100066111F062760N/ALEGLIKEGKTPQVTIKEKVSGDKRSIEANKFLWGRLYKSISNFTGYLPMEVHLLCGHLFLSEQKTINGVQVPYVRSTTDLTVEEFTSYIQNIEVYFSNLGWSSE
Ga0209492_100066115F063689N/AMNYNAQVLFRYLVLDDFGDAHKKFRTKHEAETYIINRPDHKIERLTPQPKENVFDLIKDEIPF
Ga0209492_100066116F104778AGGAMETKAFLIEEYNSQGELVWKMISFFEPDSLEWMRDLKGKKHNLVISELGVKNSKTINGIEKKYDSSKFVIGH
Ga0209492_100066118F066774AGGAMTQDTTMSNLETWVRQLNGELNVQEVARTKPALIPDVVAPYSVFLRAYDKVGLCALTNPRRFAKCNVEFVFDGNTRKLKDVRLINQNEA
Ga0209492_100066122F054870AGGAMKLLTALLIALPIASFAGESPKLRYNWVENKWNYAPQSAKLKYNWTADKYEFVVPNSELKLNTQSNNYEYVQTQIDPYKSEIGE
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