NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209492_1004919

Scaffold Ga0209492_1004919


Overview

Basic Information
Taxon OID3300027721 Open in IMG/M
Scaffold IDGa0209492_1004919 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4351
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012328Metagenome / Metatranscriptome281Y
F026827Metagenome / Metatranscriptome196Y
F049577Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0209492_10049193F026827AGGAMKSTNPQGNKEINQKRGPTTGNVATGDKRSTFMKEKSTTGSERATIANMITDALGMRGRGQAGTINPSLEGVSSNTNTGPKKNSTADGSKLPAKYKKK
Ga0209492_10049195F012328N/AMQKSNGPTDNPWDTPAEETSAKAPAKTKKNKTDWIVTPEVAPVTPPATNAGEYDIDGLMTDFPTATELERFVYDETGIVLQLKGRANKLKYQVAMDVLNGQAVDQKYVGGDNPYIDRTELVPVEALKEPPERDKNLPARGQVQNVFLSNVIPHPEDEARAQDKKVSMLFRKYNNGMISYEILGPLEQRPHGEKIDKFGRTRPEVIKWVDPRTGEQVIMREDGTLTPQGKRLRAMMQTFKVNKSNQWDVWIDREFVSLNDAVAHNPWDLKA
Ga0209492_10049196F049577AGGMTNPNVRDGMIHQAQQERITRDTIIMQKVNAAHREAFKTRFPGQVEHCMRLTAERLQAILTKKPTDLADPETWTSTADEIAKLSEALWHLSVISQVFPMEDSNEEHSK
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