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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027721 Open in IMG/M |
| Scaffold ID | Ga0209492_1005892 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4018 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | near Jamestown, North Dakota | |||||||
| Coordinates | Lat. (o) | 47.0956 | Long. (o) | -99.1001 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005295 | Metagenome / Metatranscriptome | 405 | Y |
| F012770 | Metagenome / Metatranscriptome | 277 | Y |
| F079979 | Metagenome | 115 | Y |
| F099184 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209492_10058922 | F079979 | AGGAG | MIREEEDDTTQEMRAFVLLELKQETAKLIEKIESAKVPITDEWTEGVNAGLGWAVRILRGDKSAS |
| Ga0209492_10058923 | F099184 | GAG | MVEIYLTQEEIDSSLVFVDAMRKDKQEYNVTDRKFDANNTSWAVNLMGHLGEKAVAKVYDVSVDDRVLTGGDEGHDLVINGKTVQVKTTVTKQLIFNSKELFSADYAILVTLIGDRTQPHINSHFIVWGDISREKFLSVCFEKDFGYGVRYVCNVEDLGQELNAVSVA |
| Ga0209492_10058926 | F012770 | N/A | MNIEDEPPHNHCHDCNITFPDSFALIDHYLEEDETFDPYYLLPSGFKLMLGSMLRFLFDNAHDADQVKLITQSTYVTLFASENGYDLVDELVEDMIVKSALQDFDRDLQNLLAEEPDDNEGGA |
| Ga0209492_10058929 | F005295 | GGA | MIEWERIKRWDYVVDAVASEYSRKFSTIDIEDIRQSLYQWFVEHPNKLDVWEEIGDKDAKNLIYRSLRNQALDYCNHWKAKSGGYETSDLFYYEADMVEALLPPVLRGEWGVTHKLNLGRTGRPSAPNEGGNMMAMMIEVDYAFWKLPKDDRKVLFLRYAESMEFGDI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |