Scaffold Ga0209492_1017958

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209492_1017958

Scaffold Ga0209492_1017958

Overview

Basic Information
Taxon OID	3300027721 Open in IMG/M
Scaffold ID	Ga0209492_1017958 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2415
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0956	Long. (^o)	-99.1001	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015587	Metagenome	253	Y
F021097	Metagenome	220	Y
F056536	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209492_10179584	F021097	AGG	MQRNYQRNYFSDACVAIVCGTGLGLLLSVGAQKVLNRHYKATCHNQPGHNLIYTKSFLGDTYFCINSKYMN
Ga0209492_10179585	F015587	N/A	MTKLNIRKNLASILVNTAAAVENAKLPTKVGMTEKLNEYRTRAAALIMPNDMAFIIQPKQGN
Ga0209492_10179586	F056536	N/A	MLCYYPYEGATERITWHGGESTMLHYQVQVDGYKGDPDWIERYSQTLGGGIPCGTKELLAAMSDYYQYISQLHLDTMAGTIF

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