NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209492_1090678

Scaffold Ga0209492_1090678


Overview

Basic Information
Taxon OID3300027721 Open in IMG/M
Scaffold IDGa0209492_1090678 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1078
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017628Metagenome / Metatranscriptome239Y
F040590Metagenome161Y
F099270Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209492_10906782F099270AGGMSTNFLYAQAPNRKGNMSKHTAQHSGGATADCGPKHGVSGPTGQQGAPKAVGNIASRNQKVMVSTHADYCGTIKNDGYMKNSSYNK
Ga0209492_10906783F040590GAGGMSYGKVISGGARMTNGLTKNINGKLKGFEEGHKRGQTLATAVGKAFNQNPLSDNHLNNINVAAAKKFTTPKLPTNV
Ga0209492_10906784F017628AGGMATYDIEALKSDLPTAKDLAQFVYDKVGISLDLIGKPKEEQYLVARNALEGKKIPVDFQTDLNPYIDRKELIPVDEMKKVPPRPADLPDTGSQVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVTGPIEQIAVGERINKFGQKQ
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Biomedical Sciences Research Center "Alexander Fleming"
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