 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027722 Open in IMG/M |
| Scaffold ID | Ga0209819_10000114 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22520 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (69.23%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | near Jamestown, North Dakota | |||||||
| Coordinates | Lat. (o) | 47.0956 | Long. (o) | -99.1001 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001902 | Metagenome / Metatranscriptome | 620 | Y |
| F008729 | Metagenome / Metatranscriptome | 329 | Y |
| F050636 | Metagenome | 145 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209819_1000011418 | F050636 | GGA | MDAISSRRQSKPKKQNPVRPHPRVSAAKGQWSMRRLWRWRRLGSIVLAMLLMIFTVNSFIDTYRWEKPLIEDMKKQGFEVVSLTKGSAPILPWTLFYPYVTHVTLVHPDSIKRFKGFLAADVISFNKDERDNVESWPRIVLFDCASNLVANLADQRGRYEDRIFRPDGAQIKQQWFEMNEQMNSYFCNNIFITR |
| Ga0209819_1000011419 | F001902 | GAGG | MANLYYNDRLIIAHAAFNQSTKLWSPGAEITWKRDGERQSHTIGGLADRFKTAEEAERFVINLAKTWIDADQ |
| Ga0209819_1000011422 | F008729 | AGGA | MAPVLALLAGCSSVPPIAFQNTSHRQIYSLSLADLEKLQFYISTDVVAQYQDASGTKSFLVPRLTPGVVTGAGPNWLKVSFREGGADVPFLADLTQYDPRYWIASEVEGSNDFKRIAQLPGESFIYKGTRYTLVSGADAYLLFDWEGWKKVVETRVVTEGRRVGER |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |