Scaffold Ga0209819

Basic Information
Taxon OID	3300027722 Open in IMG/M
Scaffold ID	Ga0209819_10003252 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209819_10003252 Open in IMG/M

Source Dataset Name

Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5156
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5156

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0956	Long. (^o)	-99.1001	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

near Jamestown, North Dakota

Coordinates

Lat. (^o)

47.0956

Long. (^o)

-99.1001

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002587	Metagenome / Metatranscriptome	546	Y
F002914	Metagenome / Metatranscriptome	521	Y
F007180	Metagenome / Metatranscriptome	356	Y
F016700	Metagenome / Metatranscriptome	245	Y
F018834	Metagenome	233	Y
F047927	Metagenome	149	Y
F052140	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209819_1000325210	F007180	N/A	MLQLPPELTFRALSLLLIVFLAITLVVFTLVSMWKENRFGWPLRGIWFTVAIIGSCAVIALLAGYDQTTRSLKKVKHRVEAVTLGLE
Ga0209819_1000325211	F002587	GGAGG	MAEWIEVPAHRIYVISVRELRDDFDYIGENGRPATQGEIPYRFVRKKDGKVFKWARFAPQCSGVHDYTALEEI
Ga0209819_1000325212	F047927	GAG	MAEAHQYRGHTIRFTVQRSPITLYWSAKGTIEYTEAGRFWTFIMTGAIDPFITEAEAKDGFIQQAQKWVDDRLGSKSPL
Ga0209819_100032522	F002914	AGGA	MDHICQHCGELIIGDAYRVTSEDQGIPLLDLVVCCLCSMEAKRLRLHTEEINLRSKQASARNRASHRPRLHI
Ga0209819_100032523	F052140	GAGG	MYAILRNGLVIHHFEAGNEFRTVEILCEKFHARMILAAAEMYCPEAAAEIEEAIRLSRTL
Ga0209819_100032527	F018834	N/A	MKHVSYKDYVITVATTNENGAWRSHVTITWYAGKFALHDEACFTTEMEAEEHAIELGKHWVNNRIQNMQRLP
Ga0209819_100032528	F016700	AGGGGG	VKSISARATLISLFLGLAVVSPGQAEEYYVYQTPNGALVISNKQPPPGSKIKKQLNLPEDEQAQEPHKPQPNIQPENSPSKNKHTDMTWQEKGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209819_10003252

Overview

Ecosystem & Geography

Associated Families

Sequences