NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209819_10167168

Scaffold Ga0209819_10167168


Overview

Basic Information
Taxon OID3300027722 Open in IMG/M
Scaffold IDGa0209819_10167168 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)769
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013066Metagenome274Y
F091542Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209819_101671681F013066N/AEQGFNKLYDFVEDSKPHGRPDRVTVARKSFIERNPELIKRFWKATIHAYHKMRMIPESYPFRRYVEAKIRVDNPDESERMRDLVPIVMLESSFFPLDGQLSPEGVWRILEEHIDAGVLSKAVTRKDLDEVIRQELVQEVWQEMSQTEEVKHNLERLQPVVEKYGY
Ga0209819_101671682F091542GGAMKLRVGNGCWHARHVLDAAVTLEAGFYAEEGLDVEVVHAKINPGAIDSTRPEGERYDEVGTVLRDMIAFGIDIIPDVH

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