Scaffold Ga0209819_10167168

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209819_10167168

Scaffold Ga0209819_10167168

Overview

Basic Information
Taxon OID	3300027722 Open in IMG/M
Scaffold ID	Ga0209819_10167168 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	769
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0956	Long. (^o)	-99.1001	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013066	Metagenome	274	Y
F091542	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209819_101671681	F013066	N/A	EQGFNKLYDFVEDSKPHGRPDRVTVARKSFIERNPELIKRFWKATIHAYHKMRMIPESYPFRRYVEAKIRVDNPDESERMRDLVPIVMLESSFFPLDGQLSPEGVWRILEEHIDAGVLSKAVTRKDLDEVIRQELVQEVWQEMSQTEEVKHNLERLQPVVEKYGY
Ga0209819_101671682	F091542	GGA	MKLRVGNGCWHARHVLDAAVTLEAGFYAEEGLDVEVVHAKINPGAIDSTRPEGERYDEVGTVLRDMIAFGIDIIPDVH

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