NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247836_1001653

Scaffold Ga0247836_1001653


Overview

Basic Information
Taxon OID3300027728 Open in IMG/M
Scaffold IDGa0247836_1001653 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)34845
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (78.57%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008023Metagenome / Metatranscriptome340Y
F012098Metagenome / Metatranscriptome283Y
F016389Metagenome / Metatranscriptome247Y
F019997Metagenome / Metatranscriptome226Y
F086580Metagenome / Metatranscriptome110Y
F089937Metagenome / Metatranscriptome108N
F093195Metagenome / Metatranscriptome106N
F093225Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0247836_100165312F012098AGGMPKAHKIGPKHFVQLTNFPFKWGFKVIVRGWTQEIEPPYRTSTPFIVRLPKYKALVFGAWSGMKDEEEALSTALGRREVTYNDFTKEAGWTPAPESDRETSLEDLYSRFSLMDGAVDVHDWKTYYDMAKAAE
Ga0247836_100165315F016389N/AVQGHAVPLHSHSPRGPFPPEVLAQPQMEVDPQHSDSLHEALDSTRFFKCRACEEVLLETDLDNHDCEEINGYE
Ga0247836_100165318F093195GGAMAGAIDKGHQSYNDFNSGAAAKQNPLTTVDRKMLDFAVKVSRNPVIKTHGQIVRNFGMYPPEFWTRAQKLSDHPEVDPQTKEQLSNIFSDPSRPGPMTGGAPINVNGKQFSHGLEW
Ga0247836_100165320F093225AGGMTNNMIITIFATVGIITAALLGLRQLIEPYKEKADLFMSWFEDFKRDWSGEEESPGRDRVPGVMERLNRLDGELSSNGGSSTKDVVNKMYDNQGVLMEAFVEMGERLISIEEHLAVNKSKEPV
Ga0247836_100165321F019997AGGAGMDKKALEAAAGTYLRAAAAAVAALYMSGITDPKTLANAFLAGLLGPLAKALNPKDPSYGFGAKK
Ga0247836_10016533F089937GGAGGVATISSLADRLRSEIGDIPKSFVYTFTADGTTNRFLIPYSPLDGANLIVTKNGTDISADVEVEEATGYIVCDDVPADGDDFIVAGNYFRYFTTAETQTYISTAFLEHSAFHTDAYGRSVSLQNLPTLEEYPVIIYASTLALYALANDAAFDINVFAPDGVTIPRSERYQQLMQMIESRKQQYKELCSQLGIGMFKIDVFSFRRISKTTNHYVPIFQPQEIDDRSAATRVHLPTPTYGNVETPVSIITQDLFVYEGDAYEFTIVLDFEVDTYTAKADILGVGIPGVITTFTITFPIVGSADGEGLRTLKLALTGTQTRMLPRTSYYDVQLTKDGVTTTYVRGKIFKTEEVTE
Ga0247836_10016534F008023AGGAGVANTQTSPLDATGKAAEQATKKNAEALKKRKEEISIATQLETESLEKDVFDPKKPDAPLVLDEIENVGVSTAGDYVVIRTITDIDDMSYGVGNIYTFKAGVKYRVPRSLADYLEQLGYIWRPN
Ga0247836_100165356F086580GGTGGMTTQTKDSFYLERLKTKFNTGEAYWSVGETGTAVWQPHTRNKFDVLTEHKLVDITFDEQIYKGFQLILIGFHYEFRTVLDLNGNPSSSYLADDEIGGYMNDVKSFTYYEGMAYEIGGVKDSQQNLNWLGECATLYMYGGDTDPNKTIKKCQKKLDLLSQIVSVRDELISISTERAGSYDTKNPYNTNVGDLVFIQAHGRLR
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