NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247836_1006732

Scaffold Ga0247836_1006732


Overview

Basic Information
Taxon OID3300027728 Open in IMG/M
Scaffold IDGa0247836_1006732 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)12566
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (56.76%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F006543Metagenome / Metatranscriptome370Y
F012108Metagenome / Metatranscriptome283Y
F061803Metagenome / Metatranscriptome131Y
F074795Metagenome119Y
F074805Metagenome / Metatranscriptome119Y
F088817Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0247836_100673213F012108AGGVRESLNMIANGCSLDMFEKIVCSLEVALGVNQRRVVTITGGMNTDNRIPCIKTIRLHTGWGLKEAKDWSDYLVGGWKYDKWYSAPADAKQSMTLKTPEAAEALLRDLTGLGCEGFLS
Ga0247836_100673214F006543GGAGMKKFSFAVDVVADELDRDSVVDSIRDCLSGSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHDGKVEKETTEAVA
Ga0247836_100673217F000325AGGAGMKVANGNDKLGKGCLVVSRPVGDTCPSDCDYLGNGCYAEGSEKIYPGVRPAAMQNLVTDKNRIRAMILDAIRQGKSIRWHERGDWFLNGELDTEYLENVTWACESILADGKALPDMWFYTHIYDSRLVAMEKYMAVYASIHDANDKSEAAAAGFKLFAWCDSDEKIASKRPRNKAKADAWRAALPKLVVIDDTKYIVCPEIRRGRGVVTCTPTKGSVTCDLCVRGLGNVLFPSH
Ga0247836_100673236F061803N/AMSTIDLTKQEAWKILDAIKAYSKDYTVSDSVTKVFNSITKKLQGVVNGK
Ga0247836_10067324F088817AGGAGMDGYQLIAQLNEIVKDMVLVPNSWLPENFKDHRTDSVSLADLEDKCDSMERGETDHEEEKREKARRVELYRGMIQNGQEITYLSKGLW
Ga0247836_10067326F074805N/AMVAVERLVFLTKGFDMNDVVVIGGIFAAVCAVCVVFLFNAVYGGSKANLANAAEGQVFNFTYEQPLHGTHERFLAKVIGKQTLTADQIRRLNSKSRYRANDPEFIRTNHLVTCRTADGKVRNFYAERVTNCRKPLLAGALFGSGVAARLF
Ga0247836_10067329F074795N/AMTKEQAIVKILKVLKNPMMVMSVYNRDEALTLAEEYGITAKDLIEEWTRIAERI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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