NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247836_1009209

Scaffold Ga0247836_1009209


Overview

Basic Information
Taxon OID3300027728 Open in IMG/M
Scaffold IDGa0247836_1009209 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)9664
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004475Metagenome / Metatranscriptome436Y
F034573Metagenome174Y
F045752Metagenome / Metatranscriptome152Y
F063707Metagenome / Metatranscriptome129Y
F084246Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0247836_100920913F034573AGGAGMYRISRAVHTSTEEKTAIAIGKLLSNFHLDLEKVGYYLAKATPYLIYRRALEVLESAQFQEDLVEQKRIEYNHDRLF
Ga0247836_100920917F063707AGGAGMPKCLDCNNTSRFWYVEVSHKLGMYTEDGTMEDVEDDYYDEVETSTGECAECESKNIEGP
Ga0247836_10092095F045752AGGAGMADPNQTPARGDWLCPCSGCSKSIAAERKQLIELFENHKHDYLVYRGGSFNEDGTLYWAKDDAMSYAEGIDEVIKLIKERMPKKK
Ga0247836_10092097F004475GAGGMSNWTEELSDEHKEQLWNFIVETVKEIREQIAQDIEGTSKLWKAKGLNKSRRTTKAFQISAAIARGQNEI
Ga0247836_10092098F084246AGGAGMTDKIEETTCYTYKVEMIVQILAEDEPKASDQLEKNGGYVTSRKVILMDSIPLFNGKDSN
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