NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247836_1010590

Scaffold Ga0247836_1010590


Overview

Basic Information
Taxon OID3300027728 Open in IMG/M
Scaffold IDGa0247836_1010590 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)8589
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.00%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002287Metagenome / Metatranscriptome574Y
F004838Metagenome / Metatranscriptome421Y
F005775Metagenome390N
F008615Metagenome / Metatranscriptome330N
F016114Metagenome / Metatranscriptome249Y
F025444Metagenome201N
F026828Metagenome196Y
F030991Metagenome / Metatranscriptome183N
F043770Metagenome155N

Sequences

Protein IDFamilyRBSSequence
Ga0247836_10105901F043770N/AMFTTPFIPKQSPNNAAKMDLQKRIDQLREQGFNNFALQDRPGKLTKASCGRFWPSNKEKPGWANNGDEVSRDLVAYVNKFPGLYTLHYSRSLITSGTESFEIDTRPEGEQTPINYNLA
Ga0247836_101059010F005775AGGAMAKQRPIYTKAQHQIITPAFVEKKIQLHKSIKWTTKDGRDLFLMASGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLAEVFEQITLFLKNNAGKLDQVVTKELDTYTTYHLKNLLNTNEQP
Ga0247836_101059011F016114N/AMENKYWAAAFFDSRDVETINDMAAMARRQLICVRELQRDELLRLKMKYPHLTTKD
Ga0247836_101059012F008615N/AMNRPDTFGAKMFGRFISKGWHISFTDKYQDRVCVIPPERLDAQHVFGIYIPVMRHTWQPDLKREWWAALQTKDCMLGPKFEATAHPDDTERFAAFASWIGDLLRNPEKFT
Ga0247836_101059014F026828N/AMNEELIANAIAFLAGWILKRPDFVQKIISKLFAKK
Ga0247836_101059019F030991N/AMILKYKGCDKKFFRYELYNGPRMELYIETKLSARATAKLLFRNFGIEHIVLKIYNRTYGLKT
Ga0247836_10105903F000710N/AMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGLILSSTTSAAPAVLVNALQLRVTLTINNDVVIDDVVAHELGASVASGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0247836_10105904F002287N/AMSQVSKLSYVDGKLGAPSTGQQTTRILFNTIEAPGTTSSLTFFRSFQGLTNGQTNLTQNKLDSMESMVIKTIWLAQLSTADVLQAVGALAQQTVSIIVGNQTVVKNLPIHFNQGSNGQAFDRLHENAGVRIDDTGAGTDLVQIFQPVEIRLVTDIVIPPQVAFEVRLESNSGAYGTGAVVCALSGYGKIFSAGNSF
Ga0247836_10105905F004838N/AMITAQDKILHVANKLGLTSLQNMQASTGAVYDVDTELSGQIFSQATRHANPSVTNINENQFEVNEALLVETIAFYVKNNAGATLNFQQVYGSSAVIVFDLVIGNKRVMKDTPVFAAGMPYSFANAGTQTVPVGEETRASYVPRHQVYMEGAGVLIPPQVQWFVQYTIFDLVTGAQIAASAETSIGCYLFGTKVLLNFNTSI
Ga0247836_10105908F025444N/AMYLQLAGLEPLDTALDPLAPGAPTYKYDRMYLGQSQDIILPDALFPPNVEGYAAALKSVADLYGKFSKGKKNPAAVVKTPGMSVIDPATLMLIAKGIYAGVQALSTVFRGQVTTAARQRITELYNGNNFNVQNLNKLTARQISDQITAIDSQINMTPRTQFGRQMALARFRLVYQQRFDQVSGGGGFLTALPGWVLPAALGLGAVLILRGRK
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