Scaffold Ga0247836

Overview

Basic Information
Taxon OID	3300027728 Open in IMG/M
Scaffold ID	Ga0247836_1031453 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	3500
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (21.43%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	9

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Spain: Castile-La Mancha
Coordinates	Lat. (^o)	39.9879	Long. (^o)	-1.8737	Alt. (m)	Depth (m)	14
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F048123	Metagenome / Metatranscriptome	148	Y
F064403	Metagenome / Metatranscriptome	128	N
F078229	Metagenome / Metatranscriptome	116	Y

Family

Category

Number of Sequences

3D Structure?

F027756