NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209442_1000022

Scaffold Ga0209442_1000022


Overview

Basic Information
Taxon OID3300027732 Open in IMG/M
Scaffold IDGa0209442_1000022 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)89871
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (65.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009605Metagenome / Metatranscriptome315Y
F081343Metagenome114Y
F093877Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209442_1000022110F009605AGGAMKNILNSIWSVLEAFGQARAAASLARMGDIEGAKAVYK
Ga0209442_100002242F081343AGGAMTTITHAQTINGRYLKSTSHFVSLQQRLADALKSSPVFVNMLTAMVDEYKRRHASWAKFSDMKLCEAIQVPMDKILIDSTMQRSLNLRHVLNILQNFKSSMVMAIQVYVDENKPGYYIAWEGQHTAIALHIILTKVFGEQTANAMIPVVIYNVKQKLEIRRNFILLNGDAKEELDFIDKYIQMVFGVKIDKADDQEWIDTALKNDYFAAAGLFATHSKFGDEDQPGAFTLLADTLMSKSLKTRKHPEVTRMFAQYWSFLNQQRPVEPKEARQLYEYFNLCYEQKIAVDEKYLLEFVAFTKDNFEADFSPTSPFWDKVKASYESWYAKANPESFAEFGLKGFTTEMRTGIPFLIAQLKKSTKLKVPAFTPNNGFTINKKDLW
Ga0209442_10000225F093877AGGAGMALLPATGTEIVMGRVKQAYTNVAAGAGQNISLSGTLGGFVGQAASTQITLSSRFGGQTTPYAY
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