NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209442_1013797

Scaffold Ga0209442_1013797


Overview

Basic Information
Taxon OID3300027732 Open in IMG/M
Scaffold IDGa0209442_1013797 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3878
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003579Metagenome / Metatranscriptome478Y
F031467Metagenome182N
F051896Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0209442_10137972F003579N/AMTIPIAPYTMGSPAQPKVGTLFEVRYVNYTDPTAIADCHLLDAEGVEIMPVGLVPATAEQCAAWTDDAAFAAVLAVNAGFALVTE
Ga0209442_10137976F031467N/AMDISTLFAGPLGGILGLGGAIFQKWLSMKEAKDKHSMKMEELKLSSQIDLQKAEFTLRQTTEESNATLFGKAIDAQAGLRPSSNIVSDIVALFRPGLTLALWVSSTVLSVCYRNEHPELMNFIITSTFGMFSISVGYWFGVRTEYKMSLGSSK
Ga0209442_10137977F051896N/AMSHPRNVISDVLAVVSASSSIAAWQEQLDWVLKIVASLLAISAGVYSIISRRKSRNKSSN
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