NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209442_1029711

Scaffold Ga0209442_1029711


Overview

Basic Information
Taxon OID3300027732 Open in IMG/M
Scaffold IDGa0209442_1029711 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2473
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061793Metagenome131N
F088784Metagenome / Metatranscriptome109Y
F101020Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209442_10297112F101020GAGGMNQVIKTADGYMVLMSNEDYACDAQGNNTWDTFNEAREVLDTLTVTKQEQTARIFGQHYAYVHPSYTKHWERKEIATSFYTPKSKVWYAFIRGMERHEQFPVIAKGAKADIRGVLKKLTESSSRYIEDGSWIVALSKDIEDAKYIMEHNL
Ga0209442_10297116F061793GGTGGMRYRFNYIVCYPNSTSPVASFKTMKAARAHSDKIVDDQLFEHQFFGNKVYLPIIKRELILKGNTNGQTRTTS
Ga0209442_10297119F088784N/AGYMERIMKARYKGICCKTGAIINVGDIIVYDSSTRKAWLTVDEDRMVVHVCCR
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