NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209442_1117782

Scaffold Ga0209442_1117782


Overview

Basic Information
Taxon OID3300027732 Open in IMG/M
Scaffold IDGa0209442_1117782 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1052
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021515Metagenome / Metatranscriptome218Y
F040488Metagenome / Metatranscriptome161Y
F091437Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209442_11177821F021515AGAAGMIDFEARLIKIETDVAAMKEKVSFFSVIYEKFDRTLDKLDERTIDDKKELQMMMDDLRDGVLQEIKALREEAHSQHLAQQKKIDELNKLRWLIVGGAAVIGYILSK
Ga0209442_11177822F040488N/AMEEGWGYKMKYLIALSLLFLVGCANPLTRLVPKIEMPEPPKELMAPPKSLKTIIPVVPPQSELERDVTSTEK
Ga0209442_11177823F091437N/ATEYVDKIKVVTQRETIYRDAAEQQVPGKFNLTNGWVYLHDTSVKGEELNPEMTTDDSDSVVKDNQALGTVLSNYSVCLQNAQQLVSLQSWILETKASVDKQNADRGLDIKLPEMPWKKDGVTK
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