NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000095

Scaffold Ga0209297_1000095


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000095 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60139
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001091Metagenome / Metatranscriptome781Y
F053896Metagenome / Metatranscriptome140N
F066590Metagenome / Metatranscriptome126Y
F072118Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100009518F053896N/AMKFKEFLTELAMPMDSIVHDVAIEEAVNAQLSKELNDIILSPQIGFLKIRKVLRMFNLDIPTSYAVEQEGDEVVLDLLGDTDSLLYVLYYQTDDGNYDFYACVDDEEGIEEIISKDEELEKE
Ga0209297_100009544F066590GGAMETLWEKVTQFFYKKKKMPLEGEDYRFIDFTDSELTGIQIIKGEYAGVVYHYGKVRVKEQGEMGVLEFGYTTVNPGKHNIDALQNDDEFVTIMGDILTEILTRQANETIRKDDTEEFDIQ
Ga0209297_100009548F072118N/AMPIKLVTFKTNHTIMGDVTESPVDSNIMVKQPVQVVSVPPRSATDPGSVAFSPFLEYADEFKTGFKIHSSDILIISTPVRELENQYNQIFGSGIQIASAIPKI
Ga0209297_100009550F001091AGGMNIREVAKKLAIDNKLPRADKYDLFLREFDNMVELVGFIQDPTADMNDYRGREMLFPKRWVTLAVFHPSEKVNV
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