NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000168

Scaffold Ga0209297_1000168


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000168 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44159
Total Scaffold Genes89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (29.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056430Metagenome137Y
F058814Metagenome134Y
F066566Metagenome / Metatranscriptome126N
F068461Metagenome124Y
F099284Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100016815F066566N/AMKISNNNKKIIIFGAVLFSIILALYIFNLQKYKTNCKSLENIDKIELETRLRELSDKNEQLAKQIENDAVAIKHAQNQINEFKVKCKNCTYHLSTNWEN
Ga0209297_100016833F056430N/AMNIKIFKTREQFKQYANELIDDNFWDIKNCSPFKSNPNIPYVAYARYIKKTIHGEDASELRGFKPSQNQKITDRLQEELIKLLTKDAEEIVLENDLFQVVVEKSDGNLQTAIIRLIDYSANALITHEKKHIDPSENIFLYINDHEVYLSKRQTIKINQAIQDKLDEYWAENQTEDEKEATRAEKLWEMNEGR
Ga0209297_100016840F099284N/AMKETKTAYILAKIKIKGFVKAKNINQLALKLDIKPENLRHIIDAIEVANAVDDKARHNYHDYYFRGKGKKKKGTLILCYKWADETKSVLSDKMNEILGVK
Ga0209297_100016855F058814N/AMLTKENGAKVYSIIYLLAFLFYPMFIWIDIFTPLKKETFEYLGKFLFYAGSGFFAIIGLRNINLLTGLLKK
Ga0209297_10001687F068461GGAMYKLFLLIALIAIFLFKQSHDAKKYKVEFENKLEFNSKKLHAVIADVWNINN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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