NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000173

Scaffold Ga0209297_1000173


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000173 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43572
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (18.07%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033702Metagenome / Metatranscriptome176Y
F061600Metagenome131Y
F085178Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100017328F033702N/AMKYCKVCNKEIPERRVKLGYKDTCVEHSNAFRYVGLVAASGKCDYEISIIRDKETADHMQRLAETRGAF
Ga0209297_100017334F061600N/AMEQSLNEIQTVINNLLNVKSLVRRKKKTQEAKKKELFISIINSIEAIINRQNLMYAELNLDLANYDEAFLDTIDALIILHFGKEGAELIAYFLWDRVAPDGSIEPLLDEEGTPVYLETAQDLWNLLIRINPAYGDSK
Ga0209297_100017335F085178N/AMSKREIPKAFFEPLEDIQASDLLDNEALLSMIKVETPLAIEEAFRNKKTFASLFEINGMGLYIDIPRPHWVAALEQCINFKLEEEKFEDCIKLRDLIEEIKKPIKRIPKKKEHGAITERDTDSN
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