NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000229

Scaffold Ga0209297_1000229


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000229 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38329
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (76.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003688Metagenome / Metatranscriptome473Y
F004092Metagenome / Metatranscriptome453Y
F017301Metagenome / Metatranscriptome241Y
F065439Metagenome / Metatranscriptome127N
F095454Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10002294F004092GAGMADSNFSIFHGKFPCKKCHEEVSSLRLWSETGDATWMCSAKHVSKVALIPSKKKKKDFVN
Ga0209297_100022940F065439N/AMIISSLAHMEKIVSKNKELEWIGWDVVERKRSDLARTSPSGVRVKNAWYLQKTFNLNRNGWDIPNKYGQ
Ga0209297_100022942F003688GGAGMYTDQMRRAFHSIIPPKGFKIELIDNEHFLTIKLDEYVFAKMVHDDKIQALQYVLNAKKALEMEGAIVLVTREAIK
Ga0209297_100022946F017301AGGAGGMNTEQLKALLASYGRSVLASGLALYMAGVTDPKDLWTALVAAIAPVAIRAINPNDKAFGLLPDAKAVETALKAAKAPVKKKAPAKKAAPKK
Ga0209297_100022973F095454GAGVDFGKIAIILSQINTDALELEDVEYLPSDFWKDLEDGLGLADFVAGGWAEPTEAGKSQLELAWRTLCDIREIDPETMYDNPADFFKAQV
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