Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1000229 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38329 |
Total Scaffold Genes | 73 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 56 (76.71%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003688 | Metagenome / Metatranscriptome | 473 | Y |
F004092 | Metagenome / Metatranscriptome | 453 | Y |
F017301 | Metagenome / Metatranscriptome | 241 | Y |
F065439 | Metagenome / Metatranscriptome | 127 | N |
F095454 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209297_10002294 | F004092 | GAG | MADSNFSIFHGKFPCKKCHEEVSSLRLWSETGDATWMCSAKHVSKVALIPSKKKKKDFVN |
Ga0209297_100022940 | F065439 | N/A | MIISSLAHMEKIVSKNKELEWIGWDVVERKRSDLARTSPSGVRVKNAWYLQKTFNLNRNGWDIPNKYGQ |
Ga0209297_100022942 | F003688 | GGAG | MYTDQMRRAFHSIIPPKGFKIELIDNEHFLTIKLDEYVFAKMVHDDKIQALQYVLNAKKALEMEGAIVLVTREAIK |
Ga0209297_100022946 | F017301 | AGGAGG | MNTEQLKALLASYGRSVLASGLALYMAGVTDPKDLWTALVAAIAPVAIRAINPNDKAFGLLPDAKAVETALKAAKAPVKKKAPAKKAAPKK |
Ga0209297_100022973 | F095454 | GAG | VDFGKIAIILSQINTDALELEDVEYLPSDFWKDLEDGLGLADFVAGGWAEPTEAGKSQLELAWRTLCDIREIDPETMYDNPADFFKAQV |
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