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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027733 Open in IMG/M |
| Scaffold ID | Ga0209297_1000260 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35568 |
| Total Scaffold Genes | 60 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (5.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002643 | Metagenome / Metatranscriptome | 540 | Y |
| F032657 | Metagenome | 179 | Y |
| F034181 | Metagenome | 175 | Y |
| F037724 | Metagenome / Metatranscriptome | 167 | Y |
| F051915 | Metagenome / Metatranscriptome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209297_100026031 | F034181 | AGGA | MNAVIFLNYKNYSVKTLGINLSNAGLDVEQVVIVKEKGIANAINVGLNKIDFSNIQYVTLLSNDILEPDNWLKVRNIFMQDKSVGICAIPLVGGFDDTTDIIGNFTISKEVIKNVGAFNTALDPYGAIDLDYCTRVRAAGLYTKYIHLGWATHIEQNGIDAYGYNKNELVKSTWELHTSNVANYSNGSKTYYLPL |
| Ga0209297_100026037 | F032657 | AGG | MTIIEDFIRSSYPLYTIQEFRIAFKMAVQGKLDCITEHYEKFSPKFIGQIMVAYTKKANEVRRIAKPKINQLEPPKLTDEEIILFTQKEWQDSSKSDYNRVFNADRVFDILLKQGKLIFEPKEMQKIVRIVREDNAQRLKKMYGTDAKEFNKKIKDNDFVDTQCKKLALVKYFENLSS |
| Ga0209297_100026054 | F051915 | N/A | MKFLNSIYGSWIKIFLSAILTMVMAKGDIYLVTLKECISAGIISILPIIINYINPHDKRYGK |
| Ga0209297_100026056 | F002643 | N/A | MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKESIKKLTAQVKELGEKEFEFTPIEVVNSSGLKEFTFLQDWTTGIAFITEEEEEL |
| Ga0209297_10002608 | F037724 | N/A | MNPKEALQQIRALFEDMPQVAQPQAPVEPAEPAVTKVEMAEYSLADGSKVMISALEVGGKVEMADGTPAPQGEHKLMDGTSIQVDETGTIIEIASPKEDIMPEEPVAPAAAIAPAQDTTAMVAELKADFAEQKSQLETKIAELESKVKQGFAQVAELVEALSNTPTAEPTQKAANAFQSYVSTNDTKYDRLEKYRNAILNK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |