NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000268

Scaffold Ga0209297_1000268


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000268 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34977
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (34.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010765Metagenome / Metatranscriptome299Y
F042341Metagenome / Metatranscriptome158N
F054620Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100026822F054620N/AMGIIQDEWASDAGEILAEIPKAVTVQKGNGTPTSFDVLMSEPVVQQDLETGGFLDSAAYDVKFLKSDVEARPGVVVYGNLVTFNGKQYRIVSITDRPPSAWVIARVQTKAGPAG
Ga0209297_10002688F010765GGAGGMSPAPQPDDVPVSLRDLIIGIGIGAVSWVVRYLCSTERHTVGYIARRTCVAGLTSLLVGLATQSYFSNPGLGYAAAGMAGYASPELVDAGLAWIRKQGKSKG
Ga0209297_10002689F042341AGGAMSLMSNPRPKLDPPAVLYKEPHFTFRILGKSRPTHASGSKTPFGYCWKGTGDIHIDPRQPEHEMIDTVVHELMHDCLPFLDENTVETSATKMAEAMWRLGYRRIIK
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Institute for Fundamental Biomedical Research
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