NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000274

Scaffold Ga0209297_1000274


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000274 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34716
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (71.19%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004517Metagenome / Metatranscriptome434Y
F017467Metagenome240Y
F021938Metagenome / Metatranscriptome216Y
F036031Metagenome171Y
F040482Metagenome / Metatranscriptome161N
F086791Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100027420F021938AGGAGMVCPNCGYSEGNHIETQKTDEEFFLEWWTPTIGEEAAKASWLDKVAMKSRVAPTVISDIEGHISMADGTWVSSRSKHRENLKRNGCIELGNDVPTQQKVHEFSRKEQQERKQQIADITYSKLNYR
Ga0209297_100027428F004517AGGAMVKMIPPTPMSRKYKKEDAMLRPHVESTLEKNQRERLERRAVIANKLKDLDKEVK
Ga0209297_10002743F036031GAGMNRIEIDVITGKREVIELTAQEVAQAQTQYAEWLALQPTKEEQIAKLQAQIDALNT
Ga0209297_100027441F017467AGAAGLKNNSDDYLAWWYIGVAKKRGWPAVVKLLAQYPEKEERIKQLIKKKLGK
Ga0209297_100027445F040482N/AMTWNLRLVNLSSPYEDYFEIREVYYDTMGKPIGHTKAAIGGEDRLEVDRYIELAKLALDKPILKFANNEDTSKDHERA
Ga0209297_100027451F086791GAGMSNNYLFSMYVGDTYLDVYGYIDKDEPSVGHVGGIEIEDVCTCDTKTSVWEMIHALNFDKFNEQAQMAWSERNDK
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